Items corresponding to entire populations or subpopulations. Might be geographically or temporally temporally limited.

population

The repository contains the code and the model output for county-level U.S. COVID-19 projections cases and deaths as states reopen back up. Projections are generated for daily new confirmed case, daily new infection (both reported and unreported), cumulative demand of hospital beds, ICU and ventilators as well as daily mortality (2.5, 25, 50, 75 and 97.5 percentiles).

non-collection specific

(Simple) Released

Comma-separated values: a delimited text file format for tabular data.

Plain text file with no specific encoding or markup.

Tagged Image File Format: a raster image format commonly used for high-quality images.

County

United States

English

Apache License Version 2.0

ORCID

Sen Pei

Jeffery Shaman

Teresa Yamana

Sasikiran Kandula

Projection of COVID-19 Cases and Deaths in the United States

A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.

Severe acute respiratory syndrome coronavirus 2

SARS-CoV2

An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.

host organism

Host

modeling output

Modeling Output

Homo sapiens

A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

disease

Disease

A disease whose physical basis is an infectious disorder

infectious disease

Infectious Disease

A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.

COVID-19

A method that tries to describe logical and internally consistent sequences of events to explore how the future might, could or should evolve from the past and present.

scenario analysis

Scenario Analysis

viral Infectious disease

Viruses Infection

 A count of simulated or physical individuals in a population.

Population count

Population Count

A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.

mortality data

Mortality

a dataset that is about two or more hospital stays involving two or more patients.

hospital stay dataset

Hospitalization

Descriptors of the behavior of an outbreak

modeling

Modeling

Predicted value of key outbreak parameters, including (but not limited to) fatality rate, R_0, etc.

parameter estimation

Parameter Estimation

Forecasts based on SIR (Susceptible, Infected, Recovered) models or any of the many variants of this basic famework.

compartmental models

Compartmental Models

A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.

viral respiratory tract infection

Viral Respiratory Tract Infection

Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.

Viruses

Information about capacity, including hospital beds, PPE supplies, nursing home capacity, testing sites, therapeutics, etc.

health system capacity

Health System Capacity

A count of individuals in a population who meet the criteria of some case definition during some time interval.

count of disease cases

Case Count

A count of deaths in a population that is the number of deaths that occurred during a proper part of a reference temporal interval.

incident death count

Incident Death Count

A count of infections (process) that occurred in a population in a given temporal region.

count of infections in a population

Infection Count

A count of hospital stays in a population that is the total number of hospitalizations that occur during a reference temporal interval.

cumulative hospitalization count

Cumulative Hospitalization

modeling purpose

Modeling Purpose

A count of cases in a population that is the number of individuals who come to meet the criteria of some case definition during a proper part of a reference temporal interval.

incident case count

Incident Case Count

The method or type of model used to achieve the purpose.

modeling method

Modeling Method

A count of infections in a population that is the number of infections of a given type that occurred during a proper occurrent part of a reference temporal interval.

incident infection count

Incident Infection Count

Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination

vaccine-preventable Disease

Vaccine-Preventable Disease

An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.

pathogen

Pathogen

A collection of information in various types of structured or non-structured formats.

repository

The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability

about-property-structure

Apache 2.0

Schema.org vocabulary for structured data on the web

Schema.org

A structured data markup specification for describing datasets in the life sciences, extending schema.org Dataset

Bioschemas Dataset Profile

Dublin Core Metadata Initiative Terms - refined elements for precise resource description

DCMI Metadata Terms

W3C Data Catalog Vocabulary for describing data catalogs

Data Catalog Vocabulary

DataCite metadata schema for research data citation

DataCite Metadata Schema

W3C Provenance Ontology for describing provenance information

PROV Ontology

Provenance, Authoring and Versioning ontology for metadata about web resources

PAV Ontology

Custom MIDAS vocabulary for epidemiological data and modeling

MIDAS Metadata Vocabulary

OBO Foundry ontologies for life sciences and biomedical research

Open Biological and Biomedical Ontology

GeoNames Ontology

Health Level 7 Fast Healthcare Interoperability Resources

HL7 FHIR

Systematized Nomenclature of Medicine Clinical Terms

SNOMED Clinical Terms

LOINC database for laboratory and clinical observations

Logical Observation Identifiers Names and Codes

JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records

MIDAS Catalog JSON-LD Schema

Landing page where users can browse and download dataset files in various formats.

Identifier	URL: https://github.com/shaman-lab/COVID-19Projection
Type	Repository
Topics/About	Disease Infectious Disease Vaccine-Preventable Disease COVID-19 Viruses Infection Viral Respiratory Tract Infection COVID-19 Health System Capacity Host Homo sapiens Modeling Modeling Method Compartmental Models Modeling Output Modeling Purpose Parameter Estimation Scenario Analysis Pathogen Viruses SARS-CoV2 Population Count Case Count Incident Case Count Hospitalization Cumulative Hospitalization Infection Count Incident Infection Count Mortality Incident Death Count
Language	English
License	Apache License Version 2.0
Accessible For Free	TRUE
Biological Scale	population
Geographical Scope	United States
Geographical Resolution	County
Start Date	2020/02/21
End Date	2023/04/15
Collection End Date	2023/03/06
File Format	CSV, TXT, TIF
Version	unspecified
HTTP Status Code	200
HTTP Checked On	2026/08/02