Projection of COVID-19 Cases and Deaths in the United States
The repository contains the code and the model output for county-level U.S. COVID-19 projections cases and deaths as states reopen back up. Projections are generated for daily new confirmed case, daily new infection (both reported and unreported), cumulative demand of hospital beds, ICU and ventilators as well as daily mortality (2.5, 25, 50, 75 and 97.5 percentiles).
Schema.org vocabulary for structured data on the web
A structured data markup specification for describing datasets in the life sciences, extending schema.org Dataset
Dublin Core Metadata Initiative Terms - refined elements for precise resource description
W3C Data Catalog Vocabulary for describing data catalogs
DataCite metadata schema for research data citation
W3C Provenance Ontology for describing provenance information
Provenance, Authoring and Versioning ontology for metadata about web resources
Custom MIDAS vocabulary for epidemiological data and modeling
OBO Foundry ontologies for life sciences and biomedical research
Health Level 7 Fast Healthcare Interoperability Resources
Systematized Nomenclature of Medicine Clinical Terms
Logical Observation Identifiers Names and Codes
LOINC database for laboratory and clinical observations
JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
The goal or purpose of a modeling study.
Predicted value of key outbreak parameters, including (but not limited to) fatality rate, R_0, etc.
An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.
A count of infections (process) that occurred in a population in a given temporal region.
Severe acute respiratory syndrome coronavirus 2
A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.
A count of deaths in a population that is the number of deaths that occurred during a proper part of a reference temporal interval.
A count of cases in a population that is the number of individuals who come to meet the criteria of some case definition during a proper part of a reference temporal interval.
A count of infections in a population that is the number of infections of a given type that occurred during a proper occurrent part of a reference temporal interval.
A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.
Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.
An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.
Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination
The method or type of model used to achieve the purpose.
Information about capacity, including hospital beds, PPE supplies, nursing home capacity, testing sites, therapeutics, etc.
Descriptors of the behavior of an outbreak
A method that tries to describe logical and internally consistent sequences of events to explore how the future might, could or should evolve from the past and present.
A collection of information in various types of structured or non-structured formats.
A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.
A disease whose physical basis is an infectious disorder
A count of hospital stays in a population that is the total number of hospitalizations that occur during a reference temporal interval.
A count of individuals in a population who meet the criteria of some case definition during some time interval.
Forecasts based on SIR (Susceptible, Infected, Recovered) models or any of the many variants of this basic famework.
A count of simulated or physical individuals in a population.
a dataset that is about two or more hospital stays involving two or more patients.
A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.
Landing page where users can browse and download dataset files in various formats.
National Institute of General Medical Sciences
Projection of COVID-19 Cases and Deaths in the US as Individual States Re-open May 4, 2020
Initial Simulation of SARS-CoV2 Spread and Intervention Effects in the Continental US
Detailed method in associated publication
Burden and characteristics of COVID-19 in the United States during 2020
Teresa Yamana, Sen Pei, Sasikiran Kandula, Jeffery Shaman. Projection of COVID-19 Cases and Deaths in the United States. 2021. Available from: https://github.com/shaman-lab/COVID-19Projection
The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability