Items corresponding to entire populations or subpopulations. Might be geographically or temporally temporally limited.

population

A stochastic tau-leap model in R for Covid-19 spread

non-collection specific

(Simple) Released

English

MIT License

ORCID

Rebecca Lee Smith

R is a programming language and software environment for statistical computing and graphics, widely used among statisticians and data miners.

COVID-19 Tau-leap Model

A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.

Severe acute respiratory syndrome coronavirus 2

SARS-CoV2

An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.

host organism

Host

Homo sapiens

A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

disease

Disease

A disease whose physical basis is an infectious disorder

infectious disease

Infectious Disease

A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.

COVID-19

viral Infectious disease

Viruses Infection

 A count of simulated or physical individuals in a population.

Population count

Population Count

A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.

mortality data

Mortality

a dataset that is about two or more hospital stays involving two or more patients.

hospital stay dataset

Hospitalization

Descriptors of the behavior of an outbreak

modeling

Modeling

Projections of outbreak behavior into some future time, determined relative to a defined starting point. Might include retrospective projects or projections for current activitiy (known as "now-casting").

forecasting

Forecasting

Forecasts based on SIR (Susceptible, Infected, Recovered) models or any of the many variants of this basic famework.

compartmental models

Compartmental Models

A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.

viral respiratory tract infection

Viral Respiratory Tract Infection

A census that is the specific outcome of a population demographic survey.

population demographic census

Population Demographic

Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.

Viruses

A count of individuals in a population who meet the criteria of some case definition during some time interval.

count of disease cases

Case Count

A count of deaths in a population that is the number of deaths that occurred during a proper part of a reference temporal interval.

incident death count

Incident Death Count

A count of infections (process) that occurred in a population in a given temporal region.

count of infections in a population

Infection Count

A count of hospital stays in a population that is the number of hospital stays that occurred during a proper part of a reference temporal interval.

incident hospitalization count

Incident Hospitalization

modeling purpose

Modeling Purpose

A count of cases in a population that is the number of individuals who come to meet the criteria of some case definition during a proper part of a reference temporal interval.

incident case count

Incident Case Count

The method or type of model used to achieve the purpose.

modeling method

Modeling Method

A count of infections in a population that is the number of infections of a given type that occurred during a proper occurrent part of a reference temporal interval.

incident infection count

Incident Infection Count

A count of recovery that occured in a population in a given temporal region

count of recovered in a population

Recovery Count

A count of recovery in a population that is the number of recovery that occured during a proper occurent part of a reference temporal interval.

incident recovered count

Incident Recovered Count

age-stratified

Age-Stratified

Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination

vaccine-preventable Disease

Vaccine-Preventable Disease

An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.

pathogen

Pathogen

Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit.

software

Topic

Digital Object Type

Apache 2.0

Schema.org vocabulary for structured data on the web

Schema.org

Dublin Core Metadata Initiative Terms - refined elements for precise resource description

DCMI Metadata Terms

Provenance, Authoring and Versioning ontology for metadata about web resources

PAV Ontology

W3C Provenance Ontology for describing provenance information

PROV Ontology

Custom MIDAS vocabulary for epidemiological data and modeling

MIDAS Metadata Vocabulary

Health Level 7 Fast Healthcare Interoperability Resources

HL7 FHIR

Systematized Nomenclature of Medicine Clinical Terms

SNOMED Clinical Terms

LOINC database for laboratory and clinical observations

Logical Observation Identifiers Names and Codes

OBO Foundry ontologies for life sciences and biomedical research

Open Biological and Biomedical Ontology

JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records

MIDAS Catalog JSON-LD Schema

Searchable collection of curated datasets and software resources for infectious disease modeling, filterable by disease, topic, location, and time period.

Identifier	URL: https://github.com/rlsdvm/Covid19tauleapModel
Type	Software
Topics/About	Disease Infectious Disease Vaccine-Preventable Disease COVID-19 Viruses Infection Viral Respiratory Tract Infection COVID-19 Host Homo sapiens Modeling Modeling Method Compartmental Models Modeling Purpose Forecasting Pathogen Viruses SARS-CoV2 Population Count Case Count Incident Case Count Hospitalization Incident Hospitalization Infection Count Incident Infection Count Mortality Incident Death Count Recovery Count Incident Recovered Count Population Demographic Age-Stratified
Language	English
License	MIT License
Accessible For Free	TRUE
Biological Scale	population
Software Language	R
Version	unspecified
HTTP Status Code	200
HTTP Checked On	2026/09/27