Items corresponding to entire populations or subpopulations. Might be geographically or temporally temporally limited.

population

PyRossGeo is a spatially resolved infectious disease modeling software that simulates epidemic spread across geographic regions by accounting for population movement and commuting patterns. The model tracks people traveling between locations, simulating transmission both at local nodes and during the commute itself with an age-contact structure. The model supports customizable compartmental frameworks (such as SIR, SEIR, and SEAIR) and has been validated using synthetic data on London.

non-collection specific

(Simple) Released

English

MIT License

Fernando Caballero

Jakub Dolezal

Paul Rohrbach

Tim Ekeh

Hideki Kobayashi

Rajesh Singh

Lukas Kikuchi

Python is a high-level, interpreted programming language known for its readability and broad applicability in web development, data science, and automation.

Python

PyRossGeo: spatially resolved infectious disease models in Python

Descriptors of the behavior of an outbreak

modeling

Modeling

An algorithm that models the progress of a transmissible disease in a population.

disease transmission model

Disease Transmission

Forecasts based on SIR (Susceptible, Infected, Recovered) models or any of the many variants of this basic famework.

compartmental models

Compartmental Models

Models of interactions between entities that might impact outbreak progression.

network modeling

Network Modeling

modeling purpose

Modeling Purpose

The method or type of model used to achieve the purpose.

modeling method

Modeling Method

Theoretical representations that simulate the behavior or activity of systems, processes, or phenomena.

Mathematical Model

Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit.

software

Written programs or procedures or rules and associated documentation pertaining to the operation of a computer system and that are stored in read/write memory.

Package

Topic

Digital Object Type

Apache 2.0

Schema.org vocabulary for structured data on the web

Schema.org

Dublin Core Metadata Initiative Terms - refined elements for precise resource description

DCMI Metadata Terms

Provenance, Authoring and Versioning ontology for metadata about web resources

PAV Ontology

W3C Provenance Ontology for describing provenance information

PROV Ontology

Custom MIDAS vocabulary for epidemiological data and modeling

MIDAS Metadata Vocabulary

Health Level 7 Fast Healthcare Interoperability Resources

HL7 FHIR

Systematized Nomenclature of Medicine Clinical Terms

SNOMED Clinical Terms

LOINC database for laboratory and clinical observations

Logical Observation Identifiers Names and Codes

OBO Foundry ontologies for life sciences and biomedical research

Open Biological and Biomedical Ontology

JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records

MIDAS Catalog JSON-LD Schema

Searchable collection of curated datasets and software resources for infectious disease modeling, filterable by disease, topic, location, and time period.

Identifier	URL: https://github.com/lukastk/PyRossGeo
Type	Software Package
Topics/About	Modeling Modeling Method Compartmental Models Mathematical Model Modeling Purpose Disease Transmission Network Modeling
Language	English
License	MIT License
Accessible For Free	TRUE
Biological Scale	population
Software Language	Python
HTTP Status Code	200
HTTP Checked On	2026/09/27