Items referring to sequence-level data, including genomics, microbiomics, proteomics, etc.

molecular

The Genomic Epidemiology of Mpox Dashboard contains phylogenetic trees that can be displayed by clades, sampling dates, genotypes, regions, countries, hosts, genomic composition, etc of the mpox virus. The output is visible with a phylogenic tree, on a map, and with a graph of sequence diversity and is available in multiple languages. The phylogenetic tree (NEXUS, NWK, SVG) and the metadata (TSV) are downloadable in multiple formats. 
All source code for Nextstrain is freely available under the terms of an open-source license, typically AGPL-3.0 or MIT. Refer to specific projects for details. Screenshots may be used under a CC-BY-4.0 license and attribution to nextstrain.org must be provided.

non-collection specific

(Simple) Released

Comma-separated values: a delimited text file format for tabular data.

Scalable Vector Graphics: an XML-based vector image format.

Newick: a text-based format for representing phylogenetic trees.

Tab-separated values: a delimited text file format for tabular data.

NEXUS: an extensible file format used in phylogenetics for taxa, characters, and trees.

NEXUS

Gzip-compressed tar archive (tar.gz / .tgz).

TAR.GZ

FASTA: a text-based format for representing nucleotide or amino acid sequences.

FASTA

Region

Country

Earth

English

CC BY 4.0

Nextstrain

Genomic epidemiology of mpox virus

A species of ORTHOPOXVIRUS that is the etiological agent of MPOX, MONKEYPOX.

Monkeypox virus

Mpox virus

An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.

host organism

Host

Homo sapiens

Infection by an etiologic agent that can be passed between animals and humans.

Zoonotic Infection

Zoonotic infection

A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

disease

Disease

A disease whose physical basis is an infectious disorder

infectious disease

Infectious Disease

A viral infectious disease that results in infection of primates, rodents and humans, located in skin, has_material_basis_in Monkeypox virus, which is transmitted by contact with the animal's blood, body fluids, rash, or with the body fluids of a sick person, transmitted by fomites, and transmitted by respiratory droplets. The infection has symptom fever, has symptom muscle ache, has symptom headache, and has symptom lymphadenopathy.

mpox

Mpox

A viral infectious disease that results in infection of primates, rodents and humans, located in skin, has_material_basis_in Monkeypox virus, which is transmitted by contact with the animal&apos;s blood, body fluids, rash, or with the body fluids of a sick person, transmitted by fomites, and transmitted by respiratory droplets. The infection has symptom fever, has symptom muscle ache, has symptom headache, and has symptom lymphadenopathy.

viral Infectious disease

Viruses Infection

sequence collection

Sequence Collection

Construction and/or visualization of phylogenetic trees based on sequence data

phylogenetics

Phylogenetics

Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.

Viruses

An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.

pathogen

Pathogen

A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.

data set

The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability

about-property-structure

Apache 2.0

Schema.org vocabulary for structured data on the web

Schema.org

A structured data markup specification for describing datasets in the life sciences, extending schema.org Dataset

Bioschemas Dataset Profile

Dublin Core Metadata Initiative Terms - refined elements for precise resource description

DCMI Metadata Terms

W3C Data Catalog Vocabulary for describing data catalogs

Data Catalog Vocabulary

DataCite metadata schema for research data citation

DataCite Metadata Schema

W3C Provenance Ontology for describing provenance information

PROV Ontology

Provenance, Authoring and Versioning ontology for metadata about web resources

PAV Ontology

Custom MIDAS vocabulary for epidemiological data and modeling

MIDAS Metadata Vocabulary

OBO Foundry ontologies for life sciences and biomedical research

Open Biological and Biomedical Ontology

GeoNames Ontology

Health Level 7 Fast Healthcare Interoperability Resources

HL7 FHIR

Systematized Nomenclature of Medicine Clinical Terms

SNOMED Clinical Terms

LOINC database for laboratory and clinical observations

Logical Observation Identifiers Names and Codes

JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records

MIDAS Catalog JSON-LD Schema

Landing page where users can browse and download dataset files in various formats.

Identifier	URL: https://nextstrain.org/mpox
Type	Data Set
Topics/About	Disease Infectious Disease Viruses Infection Mpox Zoonotic infection Mpox Host Homo sapiens Pathogen Viruses Mpox virus Sequence Collection Phylogenetics
Language	English
License	CC BY 4.0
Rights	https://docs.nextstrain.org/en/latest/learn/about.html
Accessible For Free	TRUE
Biological Scale	molecular
Geographical Scope	Earth
Geographical Resolution	Region, Country
Start Date	2017/02/12
File Format	CSV, SVG, NWK, TSV, NEXUS, ZIP, TAR.GZ, FASTA
Version	unspecified
HTTP Status Code	200
HTTP Checked On	2026/09/06