Items corresponding to entire populations or subpopulations. Might be geographically or temporally temporally limited.

population

This GitHub repository contains dated records of curated Mpox cases in a linelist format from the 2022 outbreak (April - September) and in a timeseries format, a data dictionary, in JSON and CSV files. The linelist contains information on travel, contact, demographics, location, symptoms, outcome.
The repository contains also monkeypox datasets with case data from the World Health Organization, U.S. Centers for Disease Control and Prevention, and the European Centre for Disease Control and Prevention.

non-collection specific

(Simple) Released

Comma-separated values: a delimited text file format for tabular data.

JavaScript Object Notation: a lightweight text-based data interchange format.

JSON

City

Country

Earth

English

CC BY 4.0

Global.health

Mpox data

A species of ORTHOPOXVIRUS that is the etiological agent of MPOX, MONKEYPOX.

Monkeypox virus

Mpox virus

A data set that is a collection of case records

infection case list

Infection Case List

An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.

host organism

Host

Homo sapiens

Infection by an etiologic agent that can be passed between animals and humans.

Zoonotic Infection

Zoonotic infection

A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

disease

Disease

A disease whose physical basis is an infectious disorder

infectious disease

Infectious Disease

A viral infectious disease that results in infection of primates, rodents and humans, located in skin, has_material_basis_in Monkeypox virus, which is transmitted by contact with the animal's blood, body fluids, rash, or with the body fluids of a sick person, transmitted by fomites, and transmitted by respiratory droplets. The infection has symptom fever, has symptom muscle ache, has symptom headache, and has symptom lymphadenopathy.

mpox

Mpox

A count of individuals in a population who meet the criteria of some case definition during some time interval.

count of disease cases

Case Count

A viral infectious disease that results in infection of primates, rodents and humans, located in skin, has_material_basis_in Monkeypox virus, which is transmitted by contact with the animal&apos;s blood, body fluids, rash, or with the body fluids of a sick person, transmitted by fomites, and transmitted by respiratory droplets. The infection has symptom fever, has symptom muscle ache, has symptom headache, and has symptom lymphadenopathy.

viral Infectious disease

Viruses Infection

A count of cases in a population that is the number of individuals who come to meet the criteria of some case definition during a proper part of a reference temporal interval.

incident case count

Incident Case Count

 A count of simulated or physical individuals in a population.

Population count

Population Count

Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.

Viruses

An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.

pathogen

Pathogen

A collection of information in various types of structured or non-structured formats.

repository

The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability

about-property-structure

Apache 2.0

Schema.org vocabulary for structured data on the web

Schema.org

A structured data markup specification for describing datasets in the life sciences, extending schema.org Dataset

Bioschemas Dataset Profile

Dublin Core Metadata Initiative Terms - refined elements for precise resource description

DCMI Metadata Terms

W3C Data Catalog Vocabulary for describing data catalogs

Data Catalog Vocabulary

DataCite metadata schema for research data citation

DataCite Metadata Schema

W3C Provenance Ontology for describing provenance information

PROV Ontology

Provenance, Authoring and Versioning ontology for metadata about web resources

PAV Ontology

Custom MIDAS vocabulary for epidemiological data and modeling

MIDAS Metadata Vocabulary

OBO Foundry ontologies for life sciences and biomedical research

Open Biological and Biomedical Ontology

GeoNames Ontology

Health Level 7 Fast Healthcare Interoperability Resources

HL7 FHIR

Systematized Nomenclature of Medicine Clinical Terms

SNOMED Clinical Terms

LOINC database for laboratory and clinical observations

Logical Observation Identifiers Names and Codes

JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records

MIDAS Catalog JSON-LD Schema

Landing page where users can browse and download dataset files in various formats.

Identifier	URL: https://github.com/globaldothealth/monkeypox
Type	Repository
Topics/About	Disease Infectious Disease Viruses Infection Mpox Zoonotic infection Mpox Host Homo sapiens Pathogen Viruses Mpox virus Population Count Case Count Incident Case Count Infection Case List
Language	English
License	CC BY 4.0
Rights	https://github.com/globaldothealth/monkeypox#license-and-attribution
Accessible For Free	TRUE
Biological Scale	population
Geographical Scope	Earth
Geographical Resolution	City, Country
Start Date	2022/04/29
End Date	2022/09/23
Collection End Date	2022/09/23
File Format	CSV, JSON
Version	ongoing
HTTP Status Code	200
HTTP Checked On	2026/08/02