Items corresponding to entire populations or subpopulations. Might be geographically or temporally temporally limited.

population

A flexible scenario modeling pipeline that tailors models for decision makers seeking to compare projections of epidemic trajectories and healthcare impacts from multiple intervention scenarios in different locations. It projects epidemic trajectories and healthcare impacts under different suites of interventions in order to aid in scenario planning. The model is generic enough to be applied to different spatial scales given shapefiles, population data, and COVID-19 confirmed case data.

non-collection specific

(Simple) Released

English

GNU GPL v3

Johns Hopkins University Infectious Disease Dynamics - COVID-19

COVID Scenario Pipeline

A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.

Severe acute respiratory syndrome coronavirus 2

An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.

host organism

Homo sapiens

A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

disease

A disease whose physical basis is an infectious disorder

infectious disease

A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.

COVID-19

viral Infectious disease

modeling purpose

The method or type of model used to achieve the purpose.

modeling method

 A count of simulated or physical individuals in a population.

Population count

A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.

mortality data

a dataset that is about two or more hospital stays involving two or more patients.

hospital stay dataset

Descriptors of the behavior of an outbreak

modeling

Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination

vaccine-preventable Disease

Projections of outbreak behavior into some future time, determined relative to a defined starting point. Might include retrospective projects or projections for current activitiy (known as "now-casting").

forecasting

Forecasts based on SIR (Susceptible, Infected, Recovered) models or any of the many variants of this basic famework.

compartmental models

A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.

viral respiratory tract infection

Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.

Viruses

Information about capacity, including hospital beds, PPE supplies, nursing home capacity, testing sites, therapeutics, etc.

health system capacity

An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.

pathogen

Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit.

software

dct:title

https://schema.org/name

The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability

about-property-structure

Apache 2.0

schema:name

Schema.org vocabulary for structured data on the web

Schema.org

Dublin Core Metadata Initiative Terms - refined elements for precise resource description

DCMI Metadata Terms

Provenance, Authoring and Versioning ontology for metadata about web resources

PAV Ontology

W3C Provenance Ontology for describing provenance information

PROV Ontology

Custom MIDAS vocabulary for epidemiological data and modeling

MIDAS Metadata Vocabulary

Health Level 7 Fast Healthcare Interoperability Resources

HL7 FHIR

Systematized Nomenclature of Medicine Clinical Terms

SNOMED Clinical Terms

LOINC database for laboratory and clinical observations

Logical Observation Identifiers Names and Codes

OBO Foundry ontologies for life sciences and biomedical research

Open Biological and Biomedical Ontology

Landing page where users can browse and download dataset files in various formats.

Identifier	URL:https://github.com/HopkinsIDD/COVIDScenarioPipeline
Type	software
Biological Scale	population
Collection End Date
Language	English
Topics	Disease Infectious Disease Vaccine-Preventable Disease COVID-19 Viruses Infection Viral Respiratory Tract Infection COVID-19 Health System Capacity Host Homo sapiens Modeling Modeling Method Compartmental Models Modeling Purpose Forecasting Pathogen Viruses SARS-CoV2 Population Count Hospitalization Mortality
Geographical Scope
Geographical Resolution
Start Date
End Date
Version	1.0
Accessible For Free	TRUE
License	GNU GPL v3
Rights	https://github.com/HopkinsIDD/COVIDScenarioPipeline/tree/v1.0.0#tools-for-using-this-repository
HTTP Status Code	200
HTTP Checked On	2025/09/01