Items corresponding to entire populations or subpopulations. Might be geographically or temporally temporally limited.

population

A flexible scenario modeling pipeline that tailors models for decision makers seeking to compare projections of epidemic trajectories and healthcare impacts from multiple intervention scenarios in different locations. It projects epidemic trajectories and healthcare impacts under different suites of interventions in order to aid in scenario planning. The model is generic enough to be applied to different spatial scales given shapefiles, population data, and COVID-19 confirmed case data.

non-collection specific

(Simple) Released

English

GNU GPL v3

Johns Hopkins University Infectious Disease Dynamics - COVID-19

Python is a high-level, interpreted programming language known for its readability and broad applicability in web development, data science, and automation.

Python

R is a programming language and software environment for statistical computing and graphics, widely used among statisticians and data miners.

COVID Scenario Pipeline

A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.

Severe acute respiratory syndrome coronavirus 2

SARS-CoV2

An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.

host organism

Host

modeling output

Modeling Output

Actions of groups of people in response to outbreaks.

behavior

Behavior

Homo sapiens

A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

disease

Disease

A disease whose physical basis is an infectious disorder

infectious disease

Infectious Disease

A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.

COVID-19

a data set that is about the human daily movement behavior of the individual huamns in a given population. 

human daily movement data set

Human Movement

A method that tries to describe logical and internally consistent sequences of events to explore how the future might, could or should evolve from the past and present.

scenario analysis

Scenario Analysis

viral Infectious disease

Viruses Infection

 A count of simulated or physical individuals in a population.

Population count

Population Count

A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.

mortality data

Mortality

a dataset that is about two or more hospital stays involving two or more patients.

hospital stay dataset

Hospitalization

Descriptors of the behavior of an outbreak

modeling

Modeling

Forecasts based on SIR (Susceptible, Infected, Recovered) models or any of the many variants of this basic famework.

compartmental models

Compartmental Models

A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.

viral respiratory tract infection

Viral Respiratory Tract Infection

Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.

Viruses

Information about capacity, including hospital beds, PPE supplies, nursing home capacity, testing sites, therapeutics, etc.

health system capacity

Health System Capacity

a census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem.

control strategy census

Control Strategy

A count of hospital stays in a population that is the number of hospital stays that occurred during a proper part of a reference temporal interval.

incident hospitalization count

Incident Hospitalization

modeling purpose

Modeling Purpose

The method or type of model used to achieve the purpose.

modeling method

Modeling Method

Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination

vaccine-preventable Disease

Vaccine-Preventable Disease

An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.

pathogen

Pathogen

Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit.

software

The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability

about-property-structure

Apache 2.0

Schema.org vocabulary for structured data on the web

Schema.org

Dublin Core Metadata Initiative Terms - refined elements for precise resource description

DCMI Metadata Terms

Provenance, Authoring and Versioning ontology for metadata about web resources

PAV Ontology

W3C Provenance Ontology for describing provenance information

PROV Ontology

Custom MIDAS vocabulary for epidemiological data and modeling

MIDAS Metadata Vocabulary

Health Level 7 Fast Healthcare Interoperability Resources

HL7 FHIR

Systematized Nomenclature of Medicine Clinical Terms

SNOMED Clinical Terms

LOINC database for laboratory and clinical observations

Logical Observation Identifiers Names and Codes

OBO Foundry ontologies for life sciences and biomedical research

Open Biological and Biomedical Ontology

JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records

MIDAS Catalog JSON-LD Schema

Landing page where users can browse and download dataset files in various formats.

Identifier	URL: https://github.com/HopkinsIDD/COVIDScenarioPipeline
Type	Software
Topics/About	Behavior Human Movement Control Strategy Disease Infectious Disease Vaccine-Preventable Disease COVID-19 Viruses Infection Viral Respiratory Tract Infection COVID-19 Health System Capacity Host Homo sapiens Modeling Modeling Method Compartmental Models Modeling Output Modeling Purpose Scenario Analysis Pathogen Viruses SARS-CoV2 Population Count Hospitalization Incident Hospitalization Mortality
Language	English
License	GNU GPL v3
Rights	https://github.com/HopkinsIDD/COVIDScenarioPipeline/tree/v1.0.0#tools-for-using-this-repository
Accessible For Free	TRUE
Biological Scale	population
Software Language	Python, R
Version	undefined
HTTP Status Code	200
HTTP Checked On	2026/07/26