Items referring to sequence-level data, including genomics, microbiomics, proteomics, etc.

molecular

Helix is currently working with numerous organizations, including the CDC, to sequence COVID-19 samples to monitor the evolution and spread of SARS-CoV-2 variants. Through these efforts, they have identified a significant portion of the publicly reported cases of the UK-discovered B.1.1.7 variant and are now providing detail on additional variants of concern (VOCs) in two interactive dashboards at state level

non-collection specific

(Simple) Released

PPTX

State

United States

English

Helix

The Helix® COVID-19 Surveillance Dashboard

A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.

Severe acute respiratory syndrome coronavirus 2

SARS-CoV2

An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.

host organism

Host

Homo sapiens

A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

disease

Disease

A disease whose physical basis is an infectious disorder

infectious disease

Infectious Disease

A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.

COVID-19

viral Infectious disease

Viruses Infection

sequence collection

Sequence Collection

 A count of simulated or physical individuals in a population.

Population count

Population Count

Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination

vaccine-preventable Disease

Vaccine-Preventable Disease

A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.

viral respiratory tract infection

Viral Respiratory Tract Infection

A population or type of organisms that is genetically different from others of the same species and possessing a set of defined characteristics.

Organism Strain

Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.

Viruses

An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.

pathogen

Pathogen

An interactive display, usually in the form of a web page, that provides a summary of the current state of some dataset, usually from multiple perspectives. May include both counrs and forecats.

dashboard

The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability

about-property-structure

Apache 2.0

Schema.org vocabulary for structured data on the web

Schema.org

Dublin Core Metadata Initiative Terms - refined elements for precise resource description

DCMI Metadata Terms

Provenance, Authoring and Versioning ontology for metadata about web resources

PAV Ontology

W3C Provenance Ontology for describing provenance information

PROV Ontology

Custom MIDAS vocabulary for epidemiological data and modeling

MIDAS Metadata Vocabulary

GeoNames Ontology

Health Level 7 Fast Healthcare Interoperability Resources

HL7 FHIR

Systematized Nomenclature of Medicine Clinical Terms

SNOMED Clinical Terms

LOINC database for laboratory and clinical observations

Logical Observation Identifiers Names and Codes

OBO Foundry ontologies for life sciences and biomedical research

Open Biological and Biomedical Ontology

JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records

MIDAS Catalog JSON-LD Schema

Landing page where users can browse and download dataset files in various formats.

Identifier	URL: https://www.helix.com/pages/helix-covid-19-surveillance-dashboard
Type	Dashboard
Topics/About	Disease Infectious Disease Vaccine-Preventable Disease COVID-19 Viruses Infection Viral Respiratory Tract Infection COVID-19 Host Homo sapiens Pathogen Viruses SARS-CoV2 Population Count Organism Strain Sequence Collection
Language	English
Accessible For Free	TRUE
Biological Scale	molecular
Geographical Scope	United States
Geographical Resolution	State
Start Date	2020/12/19
File Format	PDF, PPTX, PNG
Version	unspecified
HTTP Status Code	NA
HTTP Checked On	NA