Items corresponding to entire populations or subpopulations. Might be geographically or temporally temporally limited.

population

This is a repository for COVID-19 in South Africa containing datasets on testing, cases, recoveries, deaths, transmission types, and hospital surveillance data.

non-collection specific

(Simple) Released

Province

District

Republic of South Africa

English

CC BY-SA 4.0

ORCID

Dr. Vukosi Marivate

Data Science for Social Impact Research Group at University of Pretoria

COVID-19 South Africa

A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.

Severe acute respiratory syndrome coronavirus 2

SARS-CoV2

An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.

host organism

Host

Actions of groups of people in response to outbreaks.

behavior

Behavior

Homo sapiens

A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

disease

Disease

A disease whose physical basis is an infectious disorder

infectious disease

Infectious Disease

A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.

COVID-19

a data set that is about the human daily movement behavior of the individual huamns in a given population. 

human daily movement data set

Human Movement

viral Infectious disease

Viruses Infection

 A count of simulated or physical individuals in a population.

Population count

Population Count

A population mortality dataset that compares deaths in the population during one time interval to deaths in the population during a previous time interval and reports an estimate of how many more or less deaths occurred in the later time interval.

excess mortality dataset

Excess Mortality

A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.

mortality data

Mortality

a dataset that is about two or more hospital stays involving two or more patients.

hospital stay dataset

Hospitalization

A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.

viral respiratory tract infection

Viral Respiratory Tract Infection

A census that is the specific outcome of a population demographic survey.

population demographic census

Population Demographic

Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.

Viruses

Information about capacity, including hospital beds, PPE supplies, nursing home capacity, testing sites, therapeutics, etc.

health system capacity

Health System Capacity

a census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem.

control strategy census

Control Strategy

a population treatment census that is about one or more vaccinations of organisms in a population

vaccination administration census

Vaccination Administration

A social identity information content entity that is about whether some person identifies as some gender.

gender identity information content entity

Gender

age-stratified

Age-Stratified

Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination

vaccine-preventable Disease

Vaccine-Preventable Disease

A treatment that consists of the administration of antigenic material to stimulate an individual's immune system to develop adaptive immunity to a pathogen.

vaccination

Vaccination

A census that counts the number of treatment facilities of some kind in a particular geographical region.

treatment facility census

Treatment Facility

An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.

pathogen

Pathogen

A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.

data set

The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability

about-property-structure

Apache 2.0

Schema.org vocabulary for structured data on the web

Schema.org

A structured data markup specification for describing datasets in the life sciences, extending schema.org Dataset

Bioschemas Dataset Profile

Dublin Core Metadata Initiative Terms - refined elements for precise resource description

DCMI Metadata Terms

W3C Data Catalog Vocabulary for describing data catalogs

Data Catalog Vocabulary

DataCite metadata schema for research data citation

DataCite Metadata Schema

W3C Provenance Ontology for describing provenance information

PROV Ontology

Provenance, Authoring and Versioning ontology for metadata about web resources

PAV Ontology

Custom MIDAS vocabulary for epidemiological data and modeling

MIDAS Metadata Vocabulary

OBO Foundry ontologies for life sciences and biomedical research

Open Biological and Biomedical Ontology

GeoNames Ontology

Health Level 7 Fast Healthcare Interoperability Resources

HL7 FHIR

Systematized Nomenclature of Medicine Clinical Terms

SNOMED Clinical Terms

LOINC database for laboratory and clinical observations

Logical Observation Identifiers Names and Codes

Landing page where users can browse and download dataset files in various formats.

Identifier	URL: https://github.com/dsfsi/covid19za
Type	Data Set
Topics/About	Behavior Human Movement Control Strategy Vaccination Vaccination Administration Disease Infectious Disease Vaccine-Preventable Disease COVID-19 Viruses Infection Viral Respiratory Tract Infection COVID-19 Health System Capacity Treatment Facility Host Homo sapiens Pathogen Viruses SARS-CoV2 Population Count Hospitalization Mortality Excess Mortality Population Demographic Age-Stratified Gender
Language	English
License	CC BY-SA 4.0
Rights	https://github.com/dsfsi/covid19za/blob/master/README.md
Accessible For Free	TRUE
Biological Scale	population
Geographical Scope	Republic of South Africa
Geographical Resolution	Province, District
Start Date	2020/02/11
File Format	CSV, PDF, TXT
Version	unspecified
HTTP Status Code	200
HTTP Checked On	2026/02/15