Items corresponding to entire populations or subpopulations. Might be geographically or temporally temporally limited.

population

This application uses a compartmental epidemiological model, based on a classic SEIR model to describe the spread and clinical progression of COVID-19 in a population of individuals who have never been exposed to the disease previously.. The speed and extent to which the disease spreads - and how much it may ultimately overwhelm healthcare capacity - will depend on a number of rates related to disease transmission and progression. The application permits to set different clinical parameters, transmission rates, intervention parameters, healthcare capacity, and simulation values.

non-collection specific

(Simple) Released

English

CC BY-SA 4.0

Andrei Gheorghe

Chris Rehmann

Justin Sheen

Mike Levy

Sherrie Xie

Alison Hill

Julianna Shinnick

R is a programming language and software environment for statistical computing and graphics, widely used among statisticians and data miners.

SEIR model for COVID-19 infection, including different clinical trajectories of infection

A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.

Severe acute respiratory syndrome coronavirus 2

SARS-CoV2

An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.

host organism

Host

Homo sapiens

A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

disease

Disease

A disease whose physical basis is an infectious disorder

infectious disease

Infectious Disease

A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.

COVID-19

A method that tries to describe logical and internally consistent sequences of events to explore how the future might, could or should evolve from the past and present.

scenario analysis

Scenario Analysis

viral Infectious disease

Viruses Infection

modeling purpose

Modeling Purpose

The method or type of model used to achieve the purpose.

modeling method

Modeling Method

Descriptors of the behavior of an outbreak

modeling

Modeling

Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination

vaccine-preventable Disease

Vaccine-Preventable Disease

An algorithm that models the progress of a transmissible disease in a population.

disease transmission model

Disease Transmission

Projections of outbreak behavior into some future time, determined relative to a defined starting point. Might include retrospective projects or projections for current activitiy (known as "now-casting").

forecasting

Forecasting

Forecasts based on SIR (Susceptible, Infected, Recovered) models or any of the many variants of this basic famework.

compartmental models

Compartmental Models

A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.

viral respiratory tract infection

Viral Respiratory Tract Infection

Dynamic models are [..] called dynamic because they describe how system properties change over time: a gene’s expression level, the abundance of an endangered species, the mercury level in different organs within an individual, and so on.

dynamic models

Dynamic Models

Theoretical representations that simulate the behavior or activity of systems, processes, or phenomena.

Mathematical Model

Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.

Viruses

An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.

pathogen

Pathogen

Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit.

software

An executable file is a digital file that executes a process.

executable file

The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability

about-property-structure

Apache 2.0

Schema.org vocabulary for structured data on the web

Schema.org

Dublin Core Metadata Initiative Terms - refined elements for precise resource description

DCMI Metadata Terms

Provenance, Authoring and Versioning ontology for metadata about web resources

PAV Ontology

W3C Provenance Ontology for describing provenance information

PROV Ontology

Custom MIDAS vocabulary for epidemiological data and modeling

MIDAS Metadata Vocabulary

Health Level 7 Fast Healthcare Interoperability Resources

HL7 FHIR

Systematized Nomenclature of Medicine Clinical Terms

SNOMED Clinical Terms

LOINC database for laboratory and clinical observations

Logical Observation Identifiers Names and Codes

OBO Foundry ontologies for life sciences and biomedical research

Open Biological and Biomedical Ontology

JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records

MIDAS Catalog JSON-LD Schema

Landing page where users can browse and download dataset files in various formats.

Identifier	URL: https://alhill.shinyapps.io/COVID19seir/
Type	Software Executable File
Topics/About	Disease Infectious Disease Vaccine-Preventable Disease COVID-19 Viruses Infection Viral Respiratory Tract Infection COVID-19 Host Homo sapiens Modeling Modeling Method Compartmental Models Dynamic Models Mathematical Model Modeling Purpose Disease Transmission Forecasting Scenario Analysis Pathogen Viruses SARS-CoV2
Language	English
License	CC BY-SA 4.0
Accessible For Free	TRUE
Biological Scale	population
Software Language	R
Version	unspecified
HTTP Status Code	202
HTTP Checked On	2026/09/13