MIDAS Catalog

MIDAS

Created by Nathan Ahlgren, Jie Ren, Yang Lu, Jed Fuhrman and Fengzhu Sun
Description:

VirHostMatcher matches hosts of viruses based on oligonucleotide frequency (ONF) comparison. It is a python library with basic tools for computing various oligonucleotide frequency (ONF) based distance/dissimialrity measures between a pair of DNA sequences. These measures can be used to predict the potential host of a query virus by identifying the host to which it has the strongest similarity. VirHostMatcher provides user-friendly visualization and analyze output results through browser. The software is written in C++ and is wrapped by a python script, it requires python and C++ compiler and works under Windows, Linux or Mac environment.

Preview:
https://github.com/jessieren/VirHostMatcher/tree/v1.0.0

This site was available on the date of the last automated link check. (2025/06/16)

image
IdentifierURL:https://github.com/jessieren/VirHostMatcher/tree/v1.0.0
Typesoftware
Biological Scalemolecular
Collection End Date
LanguageEnglish
Topics
  • sequence collection
Geographical Scope
Geographical Resolution
Start Date
End Date
Version1.0.0
Accessible For FreeTRUE
Licenseunspecified
Rightshttps://github.com/jessieren/VirHostMatcher#copyright-and-license-information
HTTP Status Code200
HTTP Checked On2025/06/16